Asian-Australasian Journal of Animal Sciences

  • 제19권8호
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  • Pages.1071-1078
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  • 2006
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  • 1011-2367(pISSN)
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  • 1976-5517(eISSN)
아세아태평양축산학회 (Asian Australasian Association of Animal Production Societies)
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Multilocus Genotyping to Study Population Structure in Three Buffalo Populations of India

  • Tantia, M.S. (National Bureau of Animal Genetic Resources) ;
  • Vijh, R.K. (National Bureau of Animal Genetic Resources) ;
  • Mishra, Bina (National Bureau of Animal Genetic Resources) ;
  • Kumar, S.T. Bharani (National Bureau of Animal Genetic Resources) ;
  • Arora, Reena (National Bureau of Animal Genetic Resources)
  • 투고 : 2005.03.03
  • 심사 : 2005.06.24
  • 발행 : 2006.08.01
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초록

Three buffalo populations viz. Bhadawari, Tarai and local buffaloes of Kerala were genotyped using 24 heterologous polymorphic microsatellite loci. A total of 140 alleles were observed with an average observed heterozygosity of 0.63. All the loci were neutral and 18 out of the 24 loci were in Hardy Weinberg Equilibrium. The $F_{IS}$ values (estimate of inbreeding) for 16 loci in all the three populations were negative. This indicated lack of population structure in the three populations. The effective number of immigrants was 5.88 per generation between the Tarai and Bhadawari populations which was quite high suggesting substantial gene flow. The genetic distances revealed closeness between the Tarai and Bhadawari populations which was expected from geographical contiguity. The FST values were not significantly different from zero showing no population differentiation. The Correspondence Analysis based on the allelic frequency data clustered the majority of the Tarai and Bhadawari individuals as an admixture.

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참고문헌

  1. Anilkumar, K. and K. V. Raghunandanan. 2003. The dwarf cattle and buffalo of kerala. College of Veterinary and Animal Sciences, KAU, Mannuthy, Thrissur
  2. Arora, R., B. D. Lakhchaura, R. B. Prasad, M. S. Tantia and R. K. Vijh. 2004. Genetic diversity analysis of two buffalo populations of northern India using microsatellite markers. J. Anim. Breed. Genet. 121:111-118 https://doi.org/10.1111/j.1439-0388.2004.00451.x
  3. Barker, J. S. F., S. S. Moore, D. J. S. Hetzel, D. Evans, S. G. Tan and K. Byrne. 1997. Genetic diversity of Asian water buffalo (Bubalus bubalis): microsatellite variation and a comparison with protein coding loci. Anim. Genet. 28:103-115 https://doi.org/10.1111/j.1365-2052.1997.00085.x
  4. Barton, N. H. and M. Slatkin. 1986. A quasi-equilibrium theory of the distribution of rare alleles in a sub divided population. Heredity 56:409-415 https://doi.org/10.1038/hdy.1986.63
  5. Bassam, B. J., G. Coetano-Anolles and P. M. Gresshoff. 1991. Fast and sensitive silver staining of DNA in polyacrylamide gels, Anal. Biochem. 196:80-83 https://doi.org/10.1016/0003-2697(91)90120-I
  6. Belkhir, K., P. Borsa, J. Goudet, L. Chikhi and F. Bonhomme. 1998. Genetix, logicial sous windows TM pour la genetique des populations. Montpellier. France. www.univ-montp2.fr/$\sim$genetix/genetix.htm
  7. Bloom, M. S., M. Parsons, Y. Lacaille and S. Lotz. 1996. Use of microsatellite loci to classify individuals by relatedness. Mol. Ecol. 3:393-401 https://doi.org/10.1111/j.1365-294X.1994.tb00079.x
  8. Bowcock, A. M., A. Ruiz-Lenares, J. Tomfohrde, E. Minch and J. R. Kidd. 1994. High resolution of human evolutionary trees with polymorphic microsatellites. Nature, 368:455-457 https://doi.org/10.1038/368455a0
  9. Cho, G. J. 2005. Microsatellite polymorphism and genetic relationship in dog breeds in Korea. Asian-Aust. J. Anim. Sci. 18(8):1071-1074 https://doi.org/10.5713/ajas.2005.1071
  10. Felsestien, J. 1993. PHYLIP: A software package http://evolution.gs.washington.edu/phylip.html
  11. Fan, B., Y. Z. Chen, C. Moran, S. H. Zhao, B. Liu, M. Yu, M. J. Zhu, T. A. Xiong and K. Li. 2005. Individual-breed assignment analysis in swine populations by using microsatellite markers. Asian-Aust. J. Anim. Sci. 18(11):1529-1534 https://doi.org/10.5713/ajas.2005.1529
  12. Goldstein, D. B., A. R. Linares, L. L. Cavalli-Sforza and H. W. Feldman. 1995. An Evaluation of genetic distance for use with microsatellite loci. Genet. 139:463-471
  13. Goldstein, D. B., L. A. Zhivotovsky, K. Nayar, A. RuizLinares, L. L. Cavalli-Sforza and H. W. Feldman. 1996. Statistical properties of the variation at linked microsatellite lociimplications for the history of human Y chromosome. Mol. Biol. Evol. 13:1213-1218 https://doi.org/10.1093/oxfordjournals.molbev.a025686
  14. Jame, P. and P. J. L. Lagoda. 1996. Microsatellite from molecules to population and back. Trends Ecol. Evol. 11:424-430 https://doi.org/10.1016/0169-5347(96)10049-5
  15. Lewis, P. O. and D. Zaykin. 2002. GDA software available from http://lewis.eeb.uconn.edu/lewishome
  16. Minch, E., A. Ruiz-Linares, D. Goldstein, M. Feldman and L. L. Cavalli-Sforza. 1996. Microsat 1.4d: A computer programme for calculating various statistics on microsatellite allele data. http://Lotka.stanford.edu/microsat/microsat.html
  17. Navani, N., P. K. Jain, S. Gupta, B. S. Sisodia and S. Kumar. 2002. A set of cattle microsatellite DNA markers for genome analysis of riverine buffalo (Bubalus bubalis). Anim. Genet. 30:149-154
  18. Nei, M. 1972. Genetic distance between populations. Am. Naturalist 106:283-92 https://doi.org/10.1086/282771
  19. Nei, M., F. Tajima and Y. Tateno. 1983. Accuracy of estimated phylogenetic trees from molecular data. J. Mol. Evol. 19:153-170 https://doi.org/10.1007/BF02300753
  20. Ota, T. 1993. DISPAN: Genetic distance and Phylogenetic analysis software. http://mep.bio.psu.edu/readme.html
  21. Primmer, C. R., H. Ellegren, N. Sanio and A. P. Moller. 1996. Directional evolution in germline microsatellite mutations. Nat. Genet. 13:391-393 https://doi.org/10.1038/ng0896-391
  22. Pundir, R. K., R. V. Singh, P. K. Vij, R. K. Vijh and A. E. Nivsarkar. 1997. Characterization of Bhadawari buffaloes. NBAGR Research Bulletin No. 7, NBAGR, Karnal, India
  23. Raymond, M. and F. Rousset. 2003. GENEPOP: A web software http://wbiomed.curtin.edu.au/genepop/
  24. Robertson, A. and W. G. Hill. 1984. Deviation from Hardy Weinberg proportions; sampling variances and use in estimation of inbreeding coefficients. Genet. 107:713-718
  25. Sambrook, J., E. F. Fritsch and T. Maniatis. 1989. Molecular Cloning: A Laboratory Manual $2^{nd}$ Ed, Cold spring Harbour, Cold spring Laboratory Press, NY
  26. Sethi, R. K. 2001. Buffalo breeding in India. $2^{nd}$ edn, Dairy Year Book, All India Dairy Business Directory, Sadana Publishers and Distributors, India, pp. 264-70
  27. Weir, B. S. and C. C. Cockerham. 1984. Estimating F statistics for the analysis of population structure. Evol. 38:1358-1370 https://doi.org/10.2307/2408641
  28. Vijh, R. K., B. Mishra, R. Arora, P. Chaudhary, U. Sharma and M. S. Tantia. 2005. Comparative evaluation of three buffalo populations using microsatellite markers. Ind. J. Anim. Sci. (in press)
  29. Yeh, F. C., T. Boyle, Y. Rongcai, Z. Ye and J. M. Xian. 1999. POPGENE version 3.1 (http://www.ualberta.ca/-fyeh/fyeh)

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