DOI QR코드

DOI QR Code

Actin-related protein BAF53 is essential for the formation of replication foci

  • Kwon, Su-Jin (Department of Bioscience and Biotechnology and Protein Research Center for Bio-Industry, Hankuk University of Foreign Studies) ;
  • Kwon, Hyock-Man (Department of Bioscience and Biotechnology and Protein Research Center for Bio-Industry, Hankuk University of Foreign Studies)
  • Received : 2011.10.20
  • Accepted : 2011.11.08
  • Published : 2012.06.30

Abstract

It has been suggested that chromatin is organized into the stable structures that provide fundamental units of chromosome architecture in interphase mammalian cells. The stable structures of chromatin can be visualized as replication foci when replicating DNA is labeled with thymidine analogs. Previously, we showed that the chromosome territory expanded after BAF53 knockdown. In this study, we found that BAF53 is required for the formation of replication foci. DNA replication was not impaired in BAF53 knockdown cells, suggesting that the decrease in the number of replication foci is due to disintegration of replication foci, but not suppression of DNA replication. The attractive forces that maintain structural integrity of replication foci could be disrupted by BAF53 knockdown, and it may be responsible, at least in part, for the expansion of chromosome territories after BAF53 knockdown.

Keywords

References

  1. Albiez H, Cremer M, Tiberi C, et al. 2006. Chromatin domains and the interchromatin compartment form structurally defined and functionally interacting nuclear networks. Chromosome Res. 14:707-733. https://doi.org/10.1007/s10577-006-1086-x
  2. Belmont AS, Bruce K. 1994. Visualization of G1 chromosomes: a folded, twisted, supercoiled chromonema model of interphase chromatid structure. J Cell Biol. 127: 287-302. https://doi.org/10.1083/jcb.127.2.287
  3. Cook PR, Marenduzzo D. 2009. Entropic organization of interphase chromosomes. J Cell Biol. 186:825-834. https://doi.org/10.1083/jcb.200903083
  4. Cremer T, Cremer C. 2001. Chromosome territories, nuclear architecture and gene regulation in mammalian cells. Nat Rev Genet. 2:292-301. https://doi.org/10.1038/35066075
  5. Hatton KS, Dhar V, Brown EH, Iqbal MA, Stuart S, Didamo VT, Schildkraut CL. 1988. Replication program of active and inactive multigene families in mammalian cells. Mol Cell Biol. 8:2149-2158. https://doi.org/10.1128/MCB.8.5.2149
  6. Huberman JA, Tsai A. 1973. Direction of DNA replication in mammalian cells. J Mol Biol. 75:5-12. https://doi.org/10.1016/0022-2836(73)90525-1
  7. Jackson DA, Pombo A. 1998. Replicon clusters are stable units of chromosome structure: evidence that nuclear organization contributes to the efficient activation and propagation of S phase in human cells. J Cell Biol. 140:1285-1295. https://doi.org/10.1083/jcb.140.6.1285
  8. Lee K, Kang MJ, Kwon SJ, Kwon YK, Kim KW, Lim JH, Kwon H. 2007. Expansion of chromosome territories with chromatin decompaction in BAF53-depleted interphase cells. Mol Biol Cell. 18:4013-4023. https://doi.org/10.1091/mbc.E07-05-0437
  9. Lee K, Lee AY, Kwon YK, Kwon H. 2011. Suppression of HPV E6 and E7 expression by BAF53 depletion in cervical cancer cells. Biochem Biophys Res Commun. 412:328-333. https://doi.org/10.1016/j.bbrc.2011.07.098
  10. Lieberman-Aiden E, van Berkum NL, Williams L, et al. 2009. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science. 326:289-293. https://doi.org/10.1126/science.1181369
  11. Ma H, Samarabandu J, Devdhar RS, Acharya R, Cheng P-C, Meng C, Berezney R. 1998. Spatial and temporal dynamics of DNA replication sites in mammalian cells. J Cell Biol. 143:1415-1425. https://doi.org/10.1083/jcb.143.6.1415
  12. Mirny LA. 2011. The fractal globule as a model of chromatin architecture in the cell. Chromosome Res. 19:37-51.
  13. Muller WG, Rieder D, Kreth G, Cremer C, Trajanoski Z, McNally JG. 2004. Generic features of tertiary chromatin structure as detected in natural chromosomes. Mol Cell Biol. 24:9359-9370. https://doi.org/10.1128/MCB.24.21.9359-9370.2004
  14. Munkel C, Eils R, Dietzel S, Zink D, Mehring C, Wedemann G, Cremer T, Langowski J. 1999. Compartmentalization of interphase chromosomes observed in simulation and experiment. J Mol Biol. 285:1053-1065. https://doi.org/10.1006/jmbi.1998.2361
  15. Nakamura H, Morita T, Sato C. 1986. Structural organizations of replicon domains during DNA synthetic phase in the mammalian nucleus. Exp Cell Res. 165:291-297. https://doi.org/10.1016/0014-4827(86)90583-5
  16. Nasmyth K, Haering CH. 2009. Cohesion: its roles and mechanisms. Annu Rev Genet. 43:525-558. https://doi.org/10.1146/annurev-genet-102108-134233
  17. Ng K, Pullirsch D, Leeb M,Wutz A. 2007. Xist and the order of silencing. EMBO Rep. 8:34-39. https://doi.org/10.1038/sj.embor.7400871
  18. O'Keefe RT, Henderson SC, Spector DL. 1992. Dynamic organization of DNA replication in mammalian cell nuclei: spatially and temporally defined replication of chromosome-specific alpha-satellite DNA sequences. J Cell Biol. 116:1095-1110. https://doi.org/10.1083/jcb.116.5.1095
  19. Park PK, Kang DH, Kwon H. 2009. BAF53 is critical for focus formation of g-H2AX in response to DNA damage. Anim Cells Syst. 13:405-409. https://doi.org/10.1080/19768354.2009.9647236
  20. Phillips JE, Corces VG. 2009. CTCF: master weaver of the genome. Cell. 137:1194-1211. https://doi.org/10.1016/j.cell.2009.06.001
  21. Rando OJ, Zhao K, Janmey P, Crabtree GR. 2002. Phosphatidylinositol-dependent actin filament binding by the SWI/SNF-like BAF chromatin remodeling complex. Proc Natl Acad Sci U S A. 99:2824-2829. https://doi.org/10.1073/pnas.032662899
  22. Sung YH, Choi EY, Kwon H. 2001. Identification of a nuclear protein ArpN as a component of human SWI/ SNF complex and its selective association with a subset of active genes. Mol Cells. 11:75-81.
  23. Zhao K, Wang W, Rando OJ, Xue Y, Swiderek K, Kuo A, Crabtree GR. 1998. Rapid and phosphoinositoldependent binding of the SWI/SNF-like BAF complex to chromatin after T lymphocyte receptor signaling. Cell. 95:625-636. https://doi.org/10.1016/S0092-8674(00)81633-5
  24. Zink D, Cremer T, Saffrich R, Fischer R, Trendelenburg MF, Ansorge W, Stelzer EHK. 1998. Structure and dynamics of human interphase chromosome territories in vivo. Hum Genet. 102:241-251. https://doi.org/10.1007/s004390050686

Cited by

  1. The Actin-Related Protein BAF53 Is Essential for Chromosomal Subdomain Integrity vol.38, pp.9, 2015, https://doi.org/10.14348/molcells.2015.0109
  2. BAF53 is required for mitotic progression vol.19, pp.6, 2012, https://doi.org/10.1080/19768354.2015.1101399