• The Korean Journal of Physiology and Pharmacology
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• v.3 no.5
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• pp.501-505
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• 1999

Tryptophan hydroxylase (TPH), the rate-limiting enzyme in serotonin biosynthesis, is primarily expressed in serotonergic neurons of the raphe nuclei. Simple tandem repeat polymorphisms, typically one to four nucleotides long, are tandemly repeated several times and often characterized by many alleles. To identify the presence of polymorphic repeats, we sequenced the 5'-upstream region of the mouse TPH gene. For the detection of any allelic variants, polymerase chain reaction, nonisotopic single-strand conformation polymophism, and DNA sequencing analyses of the tandem repeat sequences were performed using genomic DNA extracted from 60 ICR mice. Two dinucleotide repeats, $5'-(AC/TG)_{22}-3'$ and $5'-(GT/CA)_{17}3',$ were identified at approximately - 5.7 kb and - 3.4 kb upstream from the transcriptional initiation site of the mouse TPH gene, respectively. Minor allelic variants, $5'-(AC/TG)_{21}-3'$ and $5'-(GT/CA)_{18}-3',$ were observed in heterozygous pairs from 3 of 60 and 1 of 60 ICR mice, respectively. The identification of these microsatellites in the mouse TPH promoter raises the possibility that identical and/or other polymorphic sequences might exist in the upstream region of the human TPH gene.

• Journal of Electrical Engineering and Technology
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• v.12 no.4
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• pp.1495-1502
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• 2017

The Theory of operation of switched reluctance motors (SRM) depends on the reluctance torque, where energy is transferred to stator winding only. Although its construction is simple, the electrical design is complex, due to the switching configuration needed to deliver power to stator coils. However, because of the nonlinearly of magnetic circuit, SRM has torque ripple. This paper proposes a new strategy to drive SRM from a single-phase AC supply. Each stator winding is connected to AC-DC or AC-AC converters, which is called branch. All branches are connected in parallel to a single-phase AC supply. A shaft encoder allows current production in stator winding during the positive torque production region and terminates it during the negative torque production region. A magnetic flux is produced between stator poles when current is supplied from AC supply to stator coil and repeats many cycles as long as the rate of change of stator inductance is positive. Different possibilities for the configurations of AC-AC or AC-DC converters are introduced to drive SRM from the single-phase AC supply. A case study is presented for a SRM fed from AC supply through semi-controlled AC-DC converter is presented. A simulation model is introduced and verified by experimental rig for two-phase SRM.

• Journal of Electrical Engineering and Technology
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• v.3 no.2
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• pp.218-223
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• 2008

A new Pareto-optimal design algorithm, requiring least computational work, is proposed for a single phase AC solenoid actuator with multi-design-objectives: maximizing holding force and minimizing eddy current loss simultaneously. In the algorithm, the design space is successively reduced by a suitable factor, as iteration repeats, with the center of pseudo-optimal point. At each iteration, the objective functions are approximated to a simple second-order response surface with the CCD sampling points generated within the reduced design space, and Pareto-optimal solutions are obtained by applying($1+{\lambda}$) evolution strategy with the fitness values of Pareto strength.

• Korean Journal of Plant Tissue Culture
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• v.24 no.2
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• pp.113-117
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• 1997

Simple sequence repeats (SSR) are widely dispersed throughout eukaryotic genomes, highly polymorphic, and easily typed using polymerase chain reaction (PCR). The objective of this study was to determine the polymorphism of different Chlamydomonas reinhartdtii strains and to determine the mode of inheritance of the SSR locus in Chlamydomonas. A genomic DNA library of C. reinhardtii was constructed and screened with a radiolabeled $(AC)_{11}$ probe for the selection of (CA/GT)n repeat clone. Selected clone was seqeuenced, and PCR primer set flanking (CA/GT)n sequence was constructed. PCR was used to specifically amplify the SSR locus from multiple isolates of C. reinhardtii. The locus was polymorphic in some of the C. reinhardtii isolates. However, the locus was amplified only 4 of 6 isolates of C. reinhardtii, not in other 2 isolates of C. reinhardtii, suggesting that this locus is not extensively conserved. A simple Mendelian inheritance pattern was found, which showed 2:2 segregation in the tetrads resulting from a cross between C. reinhardtii and C. smithii. Our results suggest that this simple sequence repeat DNA polymorphism will be useful for identity testing, population studies, linkage analysis, and genome mapping in Chlamydomonas.

• BMB Reports
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• v.42 no.12
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• pp.823-828
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• 2009

Techniques for analyzing protein-DNA interactions on a genome-wide scale have recently established regulatory roles for distal enhancers. However, the large sizes of higher eukaryotic genomes have made identification of these elements difficult. Information regarding sequence conservation, exon annotation and repetitive regions can be used to reduce the size of the search region. However, previously developed resources are inadequate for consolidating such information. CONVIRT is a web resource for the identification of transcription factor binding sites and also features comparative genomics. Genomic information on ortholog-independent conserved regions, exons, repeats and sequences is integrated into the virtual chromosome, and statistically over-represented single or combinations of transcription factor binding sites are sought. CONVIRT provides regulatory network analysis for several organisms with long promoter regions and permits inter-species genome alignments. CONVIRT is freely available at http://biosoft.kaist.ac.kr/convirt.

• Journal of the Korean Society of International Agriculture
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• v.23 no.5
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• pp.546-551
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• 2011

Chrysanthemums, often called mums or chrysanths, belong to the genus Chrysanthemum, which includes about 30 species of perennial flowering plants in the family Asteraceae. We extracted DNA from Dendranthema grandiflorum ('Smileball') to construct a simple sequence repeat (SSR)-enriched library, using a modified biotin-streptavidin capture method. GS FLX (Genome Sequencer FLX System which provides the flexibility to perform the broad range of applications) sequencing (at the 1/8 run specification) resulted in 18.83 mega base pairs (Mbp) with an average read length of 280.06 bp. Sequence analyses of all SSR-containing clones revealed a predominance of di-nucleotide motifs (16,375, 61.5%) followed by tri-nucleotide motifs (6,616, 24.8%), tetra-nucleotide motifs (1,674, 6.3%), penta-nucleotide motifs (1,283, 4.8%), and hexa-nucleotide motifs (693, 2.6%). Among the di-nucleotide motifs, the AC/CA class was the most frequently identified (93.5% of all di-nucleotide types), followed by the GA/AG class (6.1%), the AT/TA class (0.4%), and the CG/GC class (0.03%). When we analyzed the distribution of different repeat motifs and their respective numbers of repeats, regardless of the motif class, of 100 SSR markers, we found a higher number of di-nucleotide motifs with 70 to 80 repeats; we also found two di-nucleotide motifs with 83 and 89 repeats, respectively, but their product lengths were within optimum size (297 and 300 bp). In future work, we will screen for polymorphisms of possible primer pairs. The results will provide a useful tool for assessing molecular diversity and investigating the population structure among and within Chrysanthemum species.

• The Bulletin of The Korean Astronomical Society
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• v.43 no.2
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• pp.46.1-46.1
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• 2018

The Fast Imaging Solar Spectrograph (FISS) on the Goode Solar Telescope (GST) at Big Bear Solar Observatory is the imaging Echelle spectrograph developed by the Solar Astronomy Group of Seoul National University and the Solar and Space Weather Group of Korea Astronomy and Space Science Institute. The instrument takes spectral data from a region on the Sun in two spectral bands simultaneously. The imaging is done by the organization of intensity data obtained from the fast raster scan of the slit over the field of view. Since the scan repeats many times, the whole set of data can be used to construct the movies of monochromatic intensity at arbitrary wavelengths within the spectral bands, and those of line-of-sight velocity inferred from different spectral lines. So far there are two standard observing configurations: one recording the $H{\alpha}$ line and the Ca II 8542 line simultaneously, and the other recording the Na I D2 line and Fe I 5435 line simultaneously. We have developed the procedures to produce the standard data for each observing configuration. The procedures include the spatial alignment, the correction of spectral shift of instrumental origin, and the lambdameter measurement of the line wavelength. The standard data include the movie of continuum intensity, the movies of intensity and velocity inferred from a chromospheric spectral line, the movies of intensity and velocity inferred from a photospheric line. The processed standard data will be freely available online (fiss.snu.ac.kr) to be used for research and public outreach. Moreover, the IDL procedures will be provided on request as well so that each researcher can adapt the programs for their own research.

• Journal of fish pathology
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• v.8 no.1
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• pp.37-46
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• 1995

The amino acid analysis of polyhedrin protein and nucleotide sequence of polyhedrin gene in H. cunea nuclear polyhedrosis virus (HcNPV) genome have been studied. Polyhedrin had three polypeptide bands in SDS - polyactylamide gel electrophoresis. The major polypeptide had a molecular weight of 25 kd. The polyhedrin was composed of 17 different amino acids. HcNPV DNA was digested with EcoRI restriction enzyme and hybridized with ($\alpha^{32}P$) -labelled AcNPV polyhedrin gene cDNA. The polyhedrin gene was located on the fragment of EcoRI-H. The EcoRI - H fragment containing polyhedrin gene was cloned into the EcoRI site of pUC8 vector which was confirmed with southern blotting, and the recombinant plasmid containg polyhedrin gene was designated as hPE-H. The promoter region of polyhedrin genomic DNA was sequenced. The sequences identified as the TATA box was found at the 5' flanking region of the polyhedrin genomic DNA approximately -79 bp upstream from the transcriptional start site. But CAAT-like box was not shown near the TATA-like box in the polyhedrin gene. Four tandem repeats with the sequence 5' -CTAATAT-3' and 5'-TAAATAA-3' were found between -141 and -108 or -83 upstream and -52 bp downstream from the translation start site. About -141 bp region upstream from the translational start site was highly AT (78%) rich. The coding region for the polyhedrin starts and ends with ATG and TAA, respectively.