• Title/Summary/Keyword: Bioinformatics

Search Result 1,994, Processing Time 0.038 seconds

Organizing an in-class hackathon to correct PDF-to-text conversion errors of Genomics & Informatics 1.0

  • Kim, Sunho;Kim, Royoung;Nam, Hee-Jo;Kim, Ryeo-Gyeong;Ko, Enjin;Kim, Han-Su;Shin, Jihye;Cho, Daeun;Jin, Yurhee;Bae, Soyeon;Jo, Ye Won;Jeong, San Ah;Kim, Yena;Ahn, Seoyeon;Jang, Bomi;Seong, Jiheyon;Lee, Yujin;Seo, Si Eun;Kim, Yujin;Kim, Ha-Jeong;Kim, Hyeji;Sung, Hye-Lynn;Lho, Hyoyoung;Koo, Jaywon;Chu, Jion;Lim, Juwon;Kim, Youngju;Lee, Kyungyeon;Lim, Yuri;Kim, Meongeun;Hwang, Seonjeong;Han, Shinhye;Bae, Sohyeun;Kim, Sua;Yoo, Suhyeon;Seo, Yeonjeong;Shin, Yerim;Kim, Yonsoo;Ko, You-Jung;Baek, Jihee;Hyun, Hyejin;Choi, Hyemin;Oh, Ji-Hye;Kim, Da-Young;Park, Hyun-Seok
    • Genomics & Informatics
    • /
    • v.18 no.3
    • /
    • pp.33.1-33.7
    • /
    • 2020

  • This paper describes a community effort to improve earlier versions of the full-text corpus of Genomics & Informatics by semi-automatically detecting and correcting PDF-to-text conversion errors and optical character recognition errors during the first hackathon of Genomics & Informatics Annotation Hackathon (GIAH) event. Extracting text from multi-column biomedical documents such as Genomics & Informatics is known to be notoriously difficult. The hackathon was piloted as part of a coding competition of the ELTEC College of Engineering at Ewha Womans University in order to enable researchers and students to create or annotate their own versions of the Genomics & Informatics corpus, to gain and create knowledge about corpus linguistics, and simultaneously to acquire tangible and transferable skills. The proposed projects during the hackathon harness an internal database containing different versions of the corpus and annotations.

  • https://doi.org/10.5808/GI.2020.18.3.e33 인용 PDF KSCI

A Model of Problem Solving Environment for Integrated Bioinformatics Solution on Grid by Using Condor

  • Kim, Byoung-Jin;Sun, Chung-Hyun;Yi, Gwan-Su
    • Proceedings of the Korean Society for Bioinformatics Conference
    • /
    • 2004.11a
    • /
    • pp.13-20
    • /
    • 2004

  • Grid system has the potential to resolve the current need of bioinformatics for super-computing environment inexpensively. There are already several Grid applications of bioinformatics tools. To solve the real-world bioinformatics problems, however, the various integration of each tool is necessary in addition to the implementation of more basic tools. Workflow based problem solving environment can be the efficient solution for this type of software development. There are still heavy overhead, however, to develop and implement workflow model on current Grid system. He re we propose a model of simple problem solving environment that enables component based workflow design of integrated bioinformatics applications on Grid environment by using Condor functionalities. We realized this model for practical bioinformatics solutions of a genome sequence analysis and a comparative genome analysis. We implemented necessary bioinformatics tools and interfacing tools as the components, and combine them in the workflow model of each solution by using the tools presented in Condor.

  • PDF

Genomics and Patent

  • Go, S.J.;Park, D.S.;Kim, J.;Kang, H.W.;Lee, B.M.;Seo, J.S.;Lee, G.B.
    • Proceedings of the Korean Society of Plant Pathology Conference
    • /
    • 2002.09a
    • /
    • pp.197-197
    • /
    • 2002

  • PDF

Genomics of phytoplasmal disease

  • Go, S.J.;Park, D.S.;Kim, J.;Kang, H.W.;Lee, B.M.;Seo, J.S.;Lee, G.B.
    • Proceedings of the Korean Society of Plant Pathology Conference
    • /
    • 2002.09a
    • /
    • pp.194.1-194
    • /
    • 2002

  • PDF